********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.311 C 0.189 G 0.189 T 0.311 

MOTIF 1-CWGRAR STREME-1
letter-probability matrix: alength= 4 w= 6 nsites= 449 E= 1.8e-002
 0.000299 0.999219 0.000182 0.000299
 0.663138 0.000182 0.000182 0.336498
 0.000299 0.000182 0.999219 0.000299
 0.473689 0.209814 0.316198 0.000299
 0.680289 0.000182 0.319229 0.000299
 0.451003 0.138674 0.273468 0.136855

MOTIF 2-AAAAATG STREME-2
letter-probability matrix: alength= 4 w= 7 nsites= 116 E= 1.2e-001
 0.896944 0.044589 0.050380 0.008087
 0.869865 0.026693 0.010899 0.092542
 0.952636 0.014122 0.010005 0.023237
 0.688611 0.146067 0.114552 0.050770
 0.762256 0.077922 0.098144 0.061679
 0.007953 0.000859 0.003500 0.987687
 0.000997 0.000607 0.997399 0.000997

MOTIF 3-HTTTWAAAD STREME-3
letter-probability matrix: alength= 4 w= 9 nsites= 56 E= 1.7e+000
 0.321208 0.328542 0.000514 0.349736
 0.000844 0.000514 0.000514 0.998127
 0.000844 0.207923 0.229730 0.561502
 0.000844 0.000514 0.057022 0.941619
 0.499486 0.000514 0.000514 0.499486
 0.941619 0.057022 0.000514 0.000844
 0.561502 0.229730 0.207923 0.000844
 0.998127 0.000514 0.000514 0.000844
 0.349736 0.000514 0.328542 0.321208

MOTIF 4-GAGGAAR STREME-4
letter-probability matrix: alength= 4 w= 7 nsites= 66 E= 2.1e+000
 0.001494 0.000910 0.996102 0.001494
 0.723646 0.000910 0.000910 0.274534
 0.001494 0.000910 0.996102 0.001494
 0.001494 0.000910 0.996102 0.001494
 0.682907 0.167547 0.000910 0.148636
 0.704585 0.067565 0.074481 0.153369
 0.529591 0.000910 0.468005 0.001494

MOTIF 5-CCASTGG STREME-5
letter-probability matrix: alength= 4 w= 7 nsites= 54 E= 2.7e+000
 0.251191 0.504196 0.136822 0.107791
 0.008942 0.896055 0.007451 0.087552
 0.949087 0.035775 0.006971 0.008167
 0.013242 0.486758 0.486758 0.013242
 0.008167 0.006971 0.035775 0.949087
 0.087552 0.007451 0.896055 0.008942
 0.107791 0.136822 0.504196 0.251191

********************************************************************************
Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
********************************************************************************
COMMAND:	streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p MOA1_loss_diff.fa
********************************************************************************
CPU:		noble-meme.grid.gs.washington.edu
********************************************************************************
FINALTIME:	5.34 seconds
********************************************************************************
